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Survival-associated eQTLs across different cancer types


We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "STAD"
e.g., "rs1824937"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
LGG rs7761118 chr6:36068303 C/T 9.45E-10 407 15.73 14.57 6.15 KM Plot
LGG rs7762140 chr6:3036661 T/C 0.000162 398 17.53 13.97 12.9 KM Plot
LGG rs7762206 chr6:2620396 G/T 0.000229 388 15.3 15.05 11.57 KM Plot
LGG rs7762483 chr6:36055941 G/T 9.92E-10 407 15.63 15.18 6.15 KM Plot
LGG rs77625051 chr21:45476787 A/G 8.88E-14 403 15.47 14.8 3.15 KM Plot
LGG rs77637573 chr4:47660649 C/T 8.44E-5 390 14.57 16.27 16.3 KM Plot
LGG rs7764494 chr6:36081340 G/A 1.23E-14 405 15.63 15.17 5.3 KM Plot
LGG rs7766032 chr6:36068989 G/A 9.41E-10 407 15.47 15.2 6.15 KM Plot
LGG rs77672426 chr2:114459149 T/C 0 405 15.5 14.53 0.23 KM Plot
LGG rs77684954 chr7:5101858 G/A 0.000189 405 15.3 16.27 12.03 KM Plot
LGG rs7769981 chr6:36082325 G/A 1.05E-14 406 15.47 15.2 5.3 KM Plot
LGG rs77699899 chr9:94625070 C/T 6.99E-5 407 15.18 16.47 17.55 KM Plot
LGG rs7770183 chr6:36082573 C/A 1.05E-14 406 15.47 15.2 5.3 KM Plot
LGG rs7771328 chr6:57019184 G/A 3.13E-6 406 15.33 15.43 7.8 KM Plot
LGG rs7771484 chr6:36062991 A/T 9.92E-10 407 6.15 15.18 15.63 KM Plot